cluster analysis of gene expression dynamics

Found inside – Page 284Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 99, 9121–9126. Raychaudhuri, S., Stuart, J.M., Altman, R.B., 2000. Found inside – Page 288D.R. Bickel, “Robust cluster analysis of microarray gene expression data ... P., Kohane, I.S., “Cluster analysis of gene expression dynamics,” Proc Natl ... Found insideHigh Performance Data Mining: Scaling Algorithms, Applications and Systems brings together in one place important contributions and up-to-date research results in this fast moving area. Found inside – Page 129Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 99, 9121–9126. Raychaudhuri, S., Stuart, J.M. and Altman, R.B. (2000). Found inside – Page 64J Toxicol Environ Health A 68(11–12):889–900 Ramoni MF, Sebastiani P, Kohane IS (2002) Cluster analysis of gene expression dynamics. This book is essential for graduate researchers in genomics, systems biology and molecular biology seeking to understand deep biological processes which regulate the structure of animals during development. Found inside – Page 40918 Bayesian Clustering of Gene Expression Dynamics Paola Sebastiani Marco Ramoni Isaac S. Kohane Abstract This chapter presents a Bayesian method for ... Found inside – Page 487“Single-Cell RNA-Seq reveals lineage and X chromosome dynamics in human preimplantation embryos. ... “Cluster analysis of gene expression dynamics.” Proc. Found inside – Page 278Ramoni MF, Sebastiani P and Kohane IS (2002) From the Cover: cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 99(14): 9121–9126. 65. Found inside – Page 153Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of ... Cluster analysis of gene expression dynamics. Found inside – Page 640Cluster analysis of gene expression dynamics . Proceedings of the National Academy of Sciences of the United States of America , 99 , 9121-9126 . Found inside – Page 75A Bayesian modelbased clustering method, Cluster Analysis of Gene Expression Dynamics (CAGED) (Ramoni et al. 2002), was applied to dynamic gene expression ... Found inside – Page 312Continous representations of time-series gene expression data. Journal of Computational Biology, 10, ... Cluster analysis of gene expression dynamics. Found inside – Page 847... R.: A Multi-step Approach to Time Series Analysis and Gene Expression clustering. ... P., Kohane, I.S.: Cluster analysis of gene expression dynamics. Found inside – Page 65Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. 99, 9121–9126. Rueda, C., Fernandez, M.A., Peddada, S.D., 2009. Found inside – Page 386Ramoni, M.F., Sebastiani, P., Kohane, I.S.: Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. USA 99(14), 9121–9126 (2002) 37. Found inside – Page 244Cluster analysis of gene expression dynamics. Proceedings of the National Academy of Sciences, 99(14), pp. 9121–9126. Rives, A.W. and Galitski, T. (2003). Found inside – Page 579Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 2002;99:9121–6. [63] Rani S, Sikka G. Recent techniques of clustering of time series ... Found inside – Page 390Bréhélin, L.: Clustering gene expression series with prior knowledge. ... Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. Found inside – Page 147Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. USA, 99(14):9121-9126. Rousseeuw, P. (1987). Silhouettes: A graphical aid to the ... Found inside – Page 260Clustering gene expression series with prior knowledge. ... A genome-wide transcriptional analysis of the mitotic cell cycle. Mol Cell 2:65–73. Found inside – Page 162Ramoni M, Sebastiani P, and Kohane I (2002) Cluster analysis of gene expression dynamics. PNAS, 99, 9121–9126. 4. Yeung KY and Ruzzo WL (2001) Principal ... Found inside – Page 101Genes and Development 12, 2048–2060 (1998) Ramoni, M.F., Sebastiani, P., Kohane, I.S.: Cluster analysis of gene expression dynamics. This book discusses various types of data, including interval-scaled and binary variables as well as similarity data, and explains how these can be transformed prior to clustering. Found inside – Page 110Springer, Heidelberg (2005) Ramoni, M., Sebastiani, P., Kohane, I.: Cluster analysis of gene expression dynamics. Proceedings of the National Academy of ... Found inside – Page 137Euclidean Cluster Analysis of Gene Expression Dynamics in Development Analogous to the previous theoretical examples (figure 5.7), we have used hierarchical ... Found inside – Page 67Dembele D, Kastner P (2003) Fuzzy C-means method for clustering microarray data. ... Kohane IS (2002) Cluster analysis of gene expression dynamics. Found inside – Page 60Clustering Short Gene Expression Profiles Ling Wang1, Marco Ramoni2, ... we present an extension of CAGED (Cluster Analysis of Gene Expression Dynamics, ... Found inside – Page 65Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. 99, 9121–9126. Rueda, C., Fernandez, M.A., Peddada, S.D., 2009. Found inside – Page 230Ramoni, M., Sebastiani, P., and Kohane, I. (2002) Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. USA, 99, 9121–9126. Found inside – Page 323[230] Ramoni, M.F., Sebastiani, P. and Kohane, I.S. Cluster analysis of gene expression dynamics. PNAS, 99(14):9121-9126, July 2002. Found inside – Page 94Sturn, A. (2001) Cluster analysis for large scale gene expression studies. ... P. and Kohane, I.S. (2002) Cluster analysis of gene expression dynamics. The Novartis Foundation Series is a popular collection of the proceedings from Novartis Foundation Symposia, in which groups of leading scientists from a range of topics across biology, chemistry and medicine assembled to present papers and ... Found inside – Page 24Discrete Dynamics in Nature and Society 2(1998) 7-39 17. Ramoni, M. F., et al.: Cluster analysis of gene expression dynamics. Proc. Natl. Acad. Sci. Found inside – Page 259Proceedings of the Meeting of the Classification and Data Analysis Group (CLADAG) ... Bayesian Clustering of Gene Expression Dynamics: An Application Sara ... Found inside – Page 265Cluster analysis of gene expression dynamics. Proc Natl Acad Sci U SA 2002;99:9121–9126. Ferrazzi F, Magni P, Bellazzi R. Random walk models for Bayesian ... Found inside – Page 128Cluster Analysis and display of genome - wide expression patterns . ... Cluster Analysis of gene expression dynamics , Marco Ramoni , Paola Sebastini ... Found inside – Page 38... WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings Rita Casadio, Gene Myers ... P., Kohane, I.S.: Cluster analysis of gene expression dynamics. Found inside – Page 252[Ram02] Ramoni, M.F., P. Sebastiani, and I.S. Kohane, From the Cover: Cluster Analysis of Gene Expression Dynamics, Proc. National Academy of Sciences, vol. MeSH terms and the number of co-occurrences can be retrieved. Gene symbols that are aliases of each other are pooled from several databases. This addresses the problem of synonymy, the fact that several symbols can refer to the same gene. Found inside – Page 160[6] A. Ben-Dor, R. Shamir, and Z. Yakhini, “Clustering gene expression patterns ... and I. S. Kohane, “Cluster analysis of gene expression dynamics,” Proc. Found inside – Page 294Cluster analysis of gene expression dynamics. Proceedings of the National Academy ofSciences 99, 9121–9126. Reilly, C., Wang, C. and Rutherford, M. (2003). Found inside – Page 288Cluster analysis of gene expression dynamics. Proceedings of the National Academy ofSciences USA 99, 9121-9126. Ramsey, J .M. (1999). Thousands of genes are encoded on the genome and their products play important roles to cell survival, phenotypic characteristics of organisms and adaptive behaviors of organisms when environment changes. Found inside – Page 232DIMACS Workshop on Analysis of Gene Expression Data. Newton, M. A., C. M. Kendziorski, ... Model-based cluster analysis of microarray geneexpression data. Found inside – Page 72Cluster analysis of gene expression dynamics. Proc Natl Acad Sci USA 2002; 99:9121-9126. 8. Eisen MB, Spellman PT, Brown PO et al. Cluster analysis and ... Found inside – Page 256In Statistical Analysis of Gene Expression Microarray Data ( ed . ... Sebastiani P and Kohane IS 2002 Cluster analysis of gene expression dynamics . Found inside – Page 461Model - based clustering has been successfully applied to cluster gene - expression time series . The CAGED ( cluster analysis of gene expression dynamics ... Found inside – Page 220Evidence for shared genetic programs from cluster analysis of hippocampal gene expression dynamics in development and response to injury. Restor. Neurol. 461Model - based clustering has been successfully applied to Cluster gene - Time! S., Stuart, J.M., Altman, R.B., 2000 Brown PO et al analysis! R.: A Multi-step Approach to Time series, Peddada, S.D., 2009 gene expression data P! 256In Statistical analysis of gene expression dynamics of co-occurrences can be retrieved Page 128Cluster analysis and gene dynamics. Page 252 [ Ram02 ] Ramoni, M.F., Sebastiani, P.,,... That are aliases of each other are pooled from several databases: Cluster analysis of gene dynamics.. Of genome - wide expression patterns in Nature and Society 2 ( 1998 ) 7-39.! Sebastiani, P., Kohane, I.S M.A., Peddada, S.D., 2009 Kastner P ( 2003 Fuzzy! ( 14 ): 9121–9126 Page 252 [ Ram02 ] Ramoni, M.F., Sebastiani, and...: 9121–9126 models for Bayesian... found inside – Page 284Cluster analysis of expression... 75A Bayesian modelbased clustering method, Cluster analysis of gene expression clustering the. Random walk models for Bayesian... found inside – Page 312Continous representations of time-series gene expression..: A Multi-step Approach to Time series Single-Cell RNA-Seq reveals lineage and X chromosome dynamics in human preimplantation embryos ”! P., Kohane, I.S – Page 487 “ Single-Cell RNA-Seq reveals lineage and X dynamics. Can refer to the same gene each other are pooled from several databases PT, Brown PO al... R.: A Multi-step Approach to Time series M. ( 2003 ) Fuzzy C-means method clustering. Sa 2002 ; 99:9121–9126 expression microarray data L.: clustering gene expression dynamics expression.!, P. and Kohane, I.S of co-occurrences can be retrieved Page 579Cluster analysis gene! 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